I don't play small pairs from the 1st three spots like that towards the end of a tourn and if you call a raise like that from early position then its a dead give away what you have like small pairs or you're looking for an ace especially describing they way you played the hand. An opponent would know what it is by noticing what
hands you've been playing.
That's an easy fold from that position because of the people left to act after you that can just raise it 3xBB and now you have to put in a nice chunk of your stack just to see a flop. This is a play for a much earlier time in the tourn.
You can call it and see how the action goes but if its raised 2.5 -3x from a later position then I would dump it because at best you hit a 2 outer for the set and think about it, you're playing for a 2 outer while putting a nice size of your stack to go fishing for it.
You could raise it to see what action you get but understand you'll be a coinflip or worse if you get action and I like that over what you did but calling twice going for a 2 outer and even with that mindset, if the board is wet with flush and straight draws then you still won't be out of the woods.
That's why I definitely wouldn't call with baby pairs in early position like that and especially 2 times like that. If you're an aggressive player raise it, if more tight then fold it after calling the one BB if its raised 3x.
But that call, call, stuff putting a few orbits in the middle of the table doesn't seem like the way to play that hand to me.
So the long winded response is I would think about putting more planning into a hand out before even playing it like position and what stage of a tourn you're in then just what your hand is in that situation. It'll save you a lot of headaches in the long run.
And if you decide to play tight and fold those small pairs then the key isn't to question yourself if you fold the baby pairs from early position and see folks playing a passive hand where you see you could have won a big hand.
In that situation you say to yourself that you have a game plan and you're playing a solid game with discipline that you know works and catching 2 out flops like that is the EXCEPTION and not the norm.